Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15297984_15300240_R

Intron Information:

Intron Rank:

147911

Intron Class:

major

Intron Phase:

Intron Coordinates:

15297984 - 15300240

Intron Length:

2257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

ATCTTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

AGAAATTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.3

39.5

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

81.4

0.71

0.8

78.2

29.9

Minor 5ss

30.6

-2.2

3.4

39.1

46.7

Minor BPS

47.3

-0.1

1.8

62.13

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048519

15274066 - 15322236

48171