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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15358834_15364630_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15358834 - 15364630
Intron Length:
5797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
TGTTGGTGAAAT
Flanking Amino Acid:
SLKRTGSESSREIRFCFHGL
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.3
69.7
43.7
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
87
0.83
0.8
83.9
31
Minor 5ss
41
-1
3
56.9
47.2
Minor BPS
45
-0.3
2.5
71.05
45.2

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031630
15358665 - 15451860
93196