Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15362194_15364630_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15362194 - 15364630

Intron Length:

2437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCTGT

5'SS Class:

major

3'SS Sequence:

GTTTGGCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGCAT

U12 Branch Point Sequence:

TGTTTGGCATGC

Flanking Amino Acid:

SLKRTGSESSRPSTALLDPS

Intron Amino Acid Position:

845

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

1.3

69.7

43.7

Major BPS

59.9

0.25

1.5

71.4

45.1

Major PPT

0.45

1.1

62.7

43.4

Minor 5ss

-1

56.9

47.2

Minor BPS

31.4

-1.4

2.6

46.16

43.1

Associated Gene:

Gene:

EPHA4

Ensembl Gene ID:

ENSAPLG00000009611

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039729

15361636 - 15451860

90225

ENSAPLT00000028209

15358118 - 15451860

93743

ENSAPLT00000047678

15361636 - 15451860

90225

ENSAPLT00000045983

15361636 - 15451860

90225

ENSAPLT00000040229

15357665 - 15451860

94196