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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15364825_15367224_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15364825 - 15367224
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTTCTCTAATG
Flanking Amino Acid:
RPYWDMSNQDVIKAIEEGYR
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
80.4
27.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
73.2
0.52
1
65.9
39.9
Minor 5ss
41.7
-0.9
3
57.1
40.8
Minor BPS
62.2
0.24
1.7
68.74
39

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000047678
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000045983
15361636 - 15451860
90225
ENSAPLT00000040229
15357665 - 15451860
94196