Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15367375_15369922_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15367375 - 15369922

Intron Length:

2548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

TTATTTGTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

DDPEAAYTTRGGKIPIRWTA

Intron Amino Acid Position:

783

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

64.3

47.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

75.3

0.57

1.1

72.4

42.4

Minor 5ss

31.2

-2.1

3.1

31.4

42.5

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

EPHA4

Ensembl Gene ID:

ENSAPLG00000009611

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031630

15358665 - 15451860

93196

ENSAPLT00000028209

15358118 - 15451860

93743

ENSAPLT00000047678

15361636 - 15451860

90225

ENSAPLT00000010144

15361636 - 15451860

90225

ENSAPLT00000045983

15361636 - 15451860

90225

ENSAPLT00000040229

15357665 - 15451860

94196