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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15370738_15374531_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15370738 - 15374531
Intron Length:
3794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAA
U12 Branch Point Sequence:
TTTCTGTGAACT
Flanking Amino Acid:
IIHLEGVVTKCKPVMIITEY
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.7
41.5
Major BPS
66.5
0.41
1.1
68.2
37.5
Major PPT
62.7
0.29
1
52.6
41.8
Minor 5ss
37.6
-1.4
2.8
47.1
41.6
Minor BPS
55.7
0.26
2.2
82.07
39.1

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000045983
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000039729
15361636 - 15451860
90225
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000047678
15361636 - 15451860
90225