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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15374718_15374897_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15374718 - 15374897
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGATCATGGATT
Flanking Amino Acid:
CIKIEKVIGVGEFGEVCSGR
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
74.9
0.56
1
79.3
33.1
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
50.7
0.1
1.8
70.87
39.7

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000045983
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000039729
15361636 - 15451860
90225
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000047678
15361636 - 15451860
90225