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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15375012_15375815_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15375012 - 15375815
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTGACTTCAAAT
Flanking Amino Acid:
EADEEKHLNQGVRTYVDPFT
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
50.5
0.09
1.7
67.29
43

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000047678
15361636 - 15451860
90225
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000045983
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000039729
15361636 - 15451860
90225