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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15375875_15380977_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15375875 - 15380977
Intron Length:
5103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTGAACT
Flanking Amino Acid:
ILIAAFVISRRRSKYSKAKQ
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
1
76.5
37.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
71.3
0.75
1.3
85.31
34.6

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039729
15361636 - 15451860
90225
ENSAPLT00000047678
15361636 - 15451860
90225
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000045983
15361636 - 15451860
90225
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000010144
15361636 - 15451860
90225