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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15403030_15416506_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15403030 - 15416506
Intron Length:
13477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCCAGTTACT
Flanking Amino Acid:
ENDAASMPCTRPPSAPQNLI
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
62.4
44.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
41.1
-1
2.8
49.9
41
Minor BPS
47.7
-0.1
2.5
79.26
42.3

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000039729
15361636 - 15451860
90225
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000047678
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000045983
15361636 - 15451860
90225