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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15403030_15447308_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15403030 - 15447308
Intron Length:
44279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCCAGTTACT
Flanking Amino Acid:
GYEERNGECQGPPSAPQNLI
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
47.7
-0.1
2.5
79.26
42.3

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028209
15358118 - 15451860
93743