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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15451444_15451575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15451444 - 15451575
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TGTGCCTCTCCT
Flanking Amino Acid:
TGSRVYPANEVTLLDSRSVQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
55.9
0.15
1.2
49
38
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
38.1
-0.8
3.7
69.18
47.2

Associated Gene:

Gene:
EPHA4
Ensembl Gene ID:
ENSAPLG00000009611
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031630
15358665 - 15451860
93196
ENSAPLT00000028209
15358118 - 15451860
93743
ENSAPLT00000047678
15361636 - 15451860
90225
ENSAPLT00000010144
15361636 - 15451860
90225
ENSAPLT00000040229
15357665 - 15451860
94196
ENSAPLT00000039729
15361636 - 15451860
90225