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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1555622_1555671_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1555622 - 1555671
Intron Length:
50

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCTATCTG
5'SS Class:
weak_major
3'SS Sequence:
CGATCGACCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
TTGACCGAAAGC
Flanking Amino Acid:
VEKVTPPPPVAYQCKSSCIR
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.3
51.3
45.1
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
44.9
-0.2
1.6
42.7
37.2
Minor 5ss
38.8
-1.3
2.9
46.8
43.8
Minor BPS
42.9
-0.5
2.5
58.37
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027065
1555036 - 1559838
4803