Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15616642_15617169_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15616642 - 15617169

Intron Length:

528

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

CATGACTTAAAA

Flanking Amino Acid:

TGYQYGQYGQSAFHYLKPDI

Intron Amino Acid Position:

474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

83.3

27.9

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

1.1

0.4

13.8

Minor 5ss

34.6

-1.7

2.8

44.2

Minor BPS

53.5

0.11

1.8

62.89

42.8

Associated Gene:

Gene:

PAX3

Ensembl Gene ID:

ENSAPLG00000011062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011510

15616607 - 15692318

75712