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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15629721_15630902_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15629721 - 15630902
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AAATGATCAACA
Flanking Amino Acid:
PSYQPTSIPQAVSDPSSTVH
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
68
0.45
1
57.8
39
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
45.6
-0.3
2.1
57.98
40.7

Associated Gene:

Gene:
PAX3
Ensembl Gene ID:
ENSAPLG00000011062
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011510
15616607 - 15692318
75712