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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15631069_15641683_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15631069 - 15641683
Intron Length:
10615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
AAACCATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATGTGCCTAATT
Flanking Amino Acid:
RAKLTEARVQVWFSNRRARW
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
63.2
0.3
1
55.7
39.1
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
53.2
0.18
2.1
74.88
42.2

Associated Gene:

Gene:
PAX3
Ensembl Gene ID:
ENSAPLG00000011062
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011510
15616607 - 15692318
75712