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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15690240_15691478_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15690240 - 15691478
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTACTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTGTCTTTACTG
Flanking Amino Acid:
PGAIGGSKPKQVTTPDVEKK
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
68.3
0.41
1.1
68.7
36.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
62.2
0.24
1.7
66.43
42.4

Associated Gene:

Gene:
PAX3
Ensembl Gene ID:
ENSAPLG00000011062
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011510
15616607 - 15692318
75712