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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15718879_15726315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15718879 - 15726315
Intron Length:
7437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
CTGTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAAAT
Flanking Amino Acid:
MGTDGREARGCPQKYVVKN
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
57.5
0.31
1.8
73.75
43

Associated Gene:

Gene:
SGPP2
Ensembl Gene ID:
ENSAPLG00000010903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011357
15718852 - 15740463
21612