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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15726475_15732749_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15726475 - 15732749
Intron Length:
6275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGCGGGCTGACA
Flanking Amino Acid:
VSRRMIIIWSIVMYIGQVSK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
80.3
0.68
0.7
72.9
31.9
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
36.3
-1
2.5
47.32
43

Associated Gene:

Gene:
SGPP2
Ensembl Gene ID:
ENSAPLG00000010903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011357
15718852 - 15740463
21612