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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15732930_15734992_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15732930 - 15734992
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AATGTCCTAACG
Flanking Amino Acid:
FLIATMNQYKYPFELGLMAA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
51.6
-0
1.8
59.38
42.2

Associated Gene:

Gene:
SGPP2
Ensembl Gene ID:
ENSAPLG00000010903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011357
15718852 - 15740463
21612