About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15757268_15758405_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15757268 - 15758405
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTTCCTAATC
Flanking Amino Acid:
ENGYVIKATEG*
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.1
0.7
0.9
77.9
40.2
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
71.4
0.65
1.6
82.62
30.7

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022826
15757022 - 15780471
23450