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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15757528_15758405_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15757528 - 15758405
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAA
U12 Branch Point Sequence:
TTTTTCTGCACT
Flanking Amino Acid:
ENGYVIKATEGSPTA*
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
56.9
0.17
1.3
51.3
44.2
Major PPT
77
0.61
0.9
69.2
36
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
65.2
0.56
1.9
88.41
36.6

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028353
15757511 - 15780974
23464