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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15762981_15764827_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15762981 - 15764827
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTAATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTGTTAATT
Flanking Amino Acid:
SDIVVKDPSKALESFPSRGW
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70.1
0.45
1
63.9
41.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
60.4
0.4
2.1
82.74
39.5

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024542
15762412 - 15780974
18563