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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15770050_15771543_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15770050 - 15771543
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
AAAGCTTTACCT
Flanking Amino Acid:
LPNGKTHIYPELAYRKEKVK
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.4
37.9
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
85.5
0.8
0.6
84.4
23.5
Minor 5ss
43.4
-0.7
2.9
58.5
45.8
Minor BPS
54
0.2
1.7
68.11
42.8

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022826
15757022 - 15780471
23450
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368
ENSAPLT00000028353
15757511 - 15780974
23464
ENSAPLT00000024542
15762412 - 15780974
18563