Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15773124_15775531_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15773124 - 15775531

Intron Length:

2408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCATGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CATTTCTTAATT

Flanking Amino Acid:

VVLSMPPIINGDHSKINLNT

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

83.3

29.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

75.6

0.58

0.9

73.1

Minor 5ss

-0.6

3.2

62.3

43.4

Minor BPS

78.1

0.96

1.1

84.43

36.6

Associated Gene:

Gene:

FARSB

Ensembl Gene ID:

ENSAPLG00000010292

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010797

15754461 - 15780471

26011

ENSAPLT00000032458

15744607 - 15780974

36368

ENSAPLT00000028353

15757511 - 15780974

23464

ENSAPLT00000024542

15762412 - 15780974

18563

ENSAPLT00000022826

15757022 - 15780471

23450