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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15775641_15776820_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15775641 - 15776820
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TATGCTTTATTT
Flanking Amino Acid:
TAPQIMDLYRTDSHLRHYLH
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
88.7
0.87
0.7
81.4
36.2
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
60.6
0.41
1.7
76.5
40.9

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028353
15757511 - 15780974
23464
ENSAPLT00000024542
15762412 - 15780974
18563
ENSAPLT00000022826
15757022 - 15780471
23450
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368