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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15776972_15777425_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15776972 - 15777425
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AAGTCATTATTT
Flanking Amino Acid:
LQEKLHQNICRRRALVAIGT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.8
0.76
0.7
77.2
31.6
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
51.9
0.14
1.9
68.88
42

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022826
15757022 - 15780471
23450
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368
ENSAPLT00000028353
15757511 - 15780974
23464
ENSAPLT00000024542
15762412 - 15780974
18563