Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15777542_15778022_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15777542 - 15778022

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAGTG

5'SS Class:

strong_major

3'SS Sequence:

TAATCTGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

CGTACTTGAAAT

Flanking Amino Acid:

EGQKLIITEETAKVRPHAVA

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

0.9

72.3

37.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

75.8

0.58

69.5

Minor 5ss

33.4

-1.9

3.6

46.6

48.7

Minor BPS

51.9

0.14

1.6

67.85

42.5

Associated Gene:

Gene:

FARSB

Ensembl Gene ID:

ENSAPLG00000010292

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028353

15757511 - 15780974

23464

ENSAPLT00000024542

15762412 - 15780974

18563

ENSAPLT00000022826

15757022 - 15780471

23450

ENSAPLT00000010797

15754461 - 15780471

26011

ENSAPLT00000032458

15744607 - 15780974

36368