About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15778096_15778674_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15778096 - 15778674
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGAG
5'SS Class:
major
3'SS Sequence:
ATTTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTATTTTTATT
Flanking Amino Acid:
LVRGLQVFKERINLPRYEKI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
63.9
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.8
75.2
39
Minor 5ss
34.1
-1.8
3.6
45.9
49.3
Minor BPS
54
0.21
1.6
71.32
40.2

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024542
15762412 - 15780974
18563
ENSAPLT00000022826
15757022 - 15780471
23450
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368
ENSAPLT00000028353
15757511 - 15780974
23464