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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15778830_15779992_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15778830 - 15779992
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
TTTTGCTTAATT
Flanking Amino Acid:
FEFGLELDDVTSEKDIISKE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
78
0.63
0.9
74.5
39.1
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
80.1
1.02
1.6
95.75
31

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028353
15757511 - 15780974
23464
ENSAPLT00000024542
15762412 - 15780974
18563
ENSAPLT00000022826
15757022 - 15780471
23450
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368