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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15780049_15780413_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15780049 - 15780413
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAC
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
LLFQALGRSYTDEEFDELCF
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
48.3
-0.1
1.1
56.1
31
Major PPT
71
0.47
0.8
61.5
29
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
FARSB
Ensembl Gene ID:
ENSAPLG00000010292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010797
15754461 - 15780471
26011
ENSAPLT00000032458
15744607 - 15780974
36368
ENSAPLT00000028353
15757511 - 15780974
23464
ENSAPLT00000024542
15762412 - 15780974
18563
ENSAPLT00000022826
15757022 - 15780471
23450