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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15790547_15790982_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15790547 - 15790982
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGAATATTAAAA
Flanking Amino Acid:
KYFREYFPIQLIKTSDLNPN
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
49.4
-0
1.7
60.55
38.3

Associated Gene:

Gene:
MOGAT1
Ensembl Gene ID:
ENSAPLG00000010112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010541
15780155 - 15800172
20018