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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15794101_15797630_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15794101 - 15797630
Intron Length:
3530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TGTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTGCTTTACA
Flanking Amino Acid:
KGFIKMALKHGAHLVPVFSF
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
73.2
39.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.1
0.75
0.9
76.3
37.8
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
61.2
0.35
2.1
76.35
40.5

Associated Gene:

Gene:
MOGAT1
Ensembl Gene ID:
ENSAPLG00000010112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010541
15780155 - 15800172
20018