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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15797831_15800017_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15797831 - 15800017
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGACTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTGTGTTTGACT
Flanking Amino Acid:
IPFRQPIHTVVGSPIPVKRN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
77.1
0.61
1
66.7
44.1
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
65
0.55
1.8
82.48
39.6

Associated Gene:

Gene:
MOGAT1
Ensembl Gene ID:
ENSAPLG00000010112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010541
15780155 - 15800172
20018