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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15849667_15855507_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15849667 - 15855507
Intron Length:
5841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
AAAGATTCACCT
Flanking Amino Acid:
AQACFMCNYQLVTLYATLGG
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
72.7
44.5
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
40.3
-1.1
2.8
47
41.7
Minor BPS
41.2
-0.5
1.9
53.62
41.4

Associated Gene:

Gene:
ACSL3
Ensembl Gene ID:
ENSAPLG00000009888
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010318
15839544 - 15873478
33935