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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15861389_15862019_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15861389 - 15862019
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCTTTATAT
Flanking Amino Acid:
SKGYTTPLCDSLIFRKVRML
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.3
0.68
0.8
78.3
34.5
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
58.8
0.36
1.7
73.8
43.1

Associated Gene:

Gene:
ACSL3
Ensembl Gene ID:
ENSAPLG00000009888
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010318
15839544 - 15873478
33935