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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15864519_15865770_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15864519 - 15865770
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTTTCTCAATA
Flanking Amino Acid:
FHQDGCLKIIDRKKDLVKLQ
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
77.1
0.61
0.8
74.2
29.5
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
67.1
0.53
1.5
74.85
37.3

Associated Gene:

Gene:
ACSL3
Ensembl Gene ID:
ENSAPLG00000009888
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010318
15839544 - 15873478
33935