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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15865886_15870328_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15865886 - 15870328
Intron Length:
4443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTACTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATACTAAAAT
Flanking Amino Acid:
LVDNICAYASSFHSYVIGFV
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73.1
0.52
0.9
69.5
41.3
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
51.3
0.12
2
71.17
45.1

Associated Gene:

Gene:
ACSL3
Ensembl Gene ID:
ENSAPLG00000009888
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010318
15839544 - 15873478
33935