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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15893615_15893872_F

Intron Information:

Intron Rank:
150391
Intron Class:
major
Intron Phase:
Intron Coordinates:
15893615 - 15893872
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
TTCTTCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
69.1
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
43.3
-0.7
2.8
55.8
42.2
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030829
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032528
15888743 - 15893928
5186