Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16020522_16052111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16020522 - 16052111

Intron Length:

31590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTATTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TCTTCTTTATTT

Flanking Amino Acid:

NVCRSPSTEPGNILNMAETK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

81.9

0.79

0.8

81.9

Major PPT

77.2

0.61

75.8

37.4

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

0.71

1.5

83.14

Associated Gene:

Gene:

SCG2

Ensembl Gene ID:

ENSAPLG00000001800

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001795

16018624 - 16052196

33573