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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16061185_16062148_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16061185 - 16062148
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGTGATTTAAAT
Flanking Amino Acid:
VELLDRYFGNVCELDIIFNF
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
73.2
39.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.9
0.74
0.9
77.7
36.7
Minor 5ss
44.7
-0.6
3.1
59.8
38.6
Minor BPS
52.5
0.16
1.7
69.47
41.1

Associated Gene:

Gene:
AP1S3
Ensembl Gene ID:
ENSAPLG00000009698
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043936
16056523 - 16065963
9441
ENSAPLT00000034399
16056523 - 16065867
9345
ENSAPLT00000010107
16056523 - 16068175
11653