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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16063575_16068172_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16063575 - 16068172
Intron Length:
4598

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTTGGCTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTTTGTTTACTC
Flanking Amino Acid:
EIHFILLFSRQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.4
61.8
43.1
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
78.3
0.64
0.9
71.4
39.5
Minor 5ss
30.5
-2.2
4.3
48.7
41.6
Minor BPS
50
-0
2
65.01
41.9

Associated Gene:

Gene:
AP1S3
Ensembl Gene ID:
ENSAPLG00000009698
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010107
16056523 - 16068175
11653