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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16087509_16087710_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16087509 - 16087710
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTCATTTGACC
Flanking Amino Acid:
EEGRPGIVTPVRTSLATFHE
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
58.2
0.24
1.5
68.06
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025868
16086173 - 16109319
23147