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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16087509_16088500_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16087509 - 16088500
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTCATTTGACC
Flanking Amino Acid:
DSCFESIKDEDRTSLATFHE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
58.2
0.24
1.5
68.06
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009707
16085419 - 16109319
23901