About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16087738_16088500_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16087738 - 16088500
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTAACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACATTTTTAACA
Flanking Amino Acid:
DSCFESIKDEEGRPGIVTPV
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.4
0.62
1
71.5
38.5
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
69.7
0.62
1.2
69.76
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025868
16086173 - 16109319
23147