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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16089441_16091787_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16089441 - 16091787
Intron Length:
2347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATAATCTAATT
Flanking Amino Acid:
VWNMDISREEAPQWLESDSC
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.4
0.53
0.9
68.7
37.2
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
49.7
0.06
1.8
71.85
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028771
15902639 - 16109319
206681
ENSAPLT00000025868
16086173 - 16109319
23147
ENSAPLT00000009707
16085419 - 16109319
23901