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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16091894_16093404_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16091894 - 16093404
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
CCTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATAGCATATCC
Flanking Amino Acid:
KGRTLLLQGHHDKVQAICYI
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
73.7
36.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
45.7
-0.5
2.6
65
40.2
Minor BPS
43.2
-0.5
2.2
56.05
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028771
15902639 - 16109319
206681
ENSAPLT00000025868
16086173 - 16109319
23147
ENSAPLT00000009707
16085419 - 16109319
23901