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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16100138_16101342_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16100138 - 16101342
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCGTTTCTAACA
Flanking Amino Acid:
FVGQDNGAIMEFHVSEDFNK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
66.6
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.7
0.51
1
69.7
41
Minor 5ss
37.2
-1.4
3.3
46.9
44
Minor BPS
57.6
0.24
1.7
66.89
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009281
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028771
15902639 - 16109319
206681
ENSAPLT00000025868
16086173 - 16109319
23147
ENSAPLT00000009707
16085419 - 16109319
23901