Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16102485_16109182_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16102485 - 16109182

Intron Length:

6698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCCGGGGC

5'SS Class:

major

3'SS Sequence:

TCTCATAATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CTTCTCATAATG

Flanking Amino Acid:

EDGVITASEDRTIRVWLKRD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.32

1.4

58.7

40.1

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

72.6

0.51

66.7

38.1

Minor 5ss

23.9

-3

3.4

42.1

Minor BPS

-0

1.7

61.17

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028771

15902639 - 16109319

206681

ENSAPLT00000025868

16086173 - 16109319

23147

ENSAPLT00000009707

16085419 - 16109319

23901