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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16117289_16118162_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16117289 - 16118162
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCGTTTCATT
Flanking Amino Acid:
FVFFIRHNPTGTILFMGQIN
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.3
0.66
0.8
77.3
31.3
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
49.8
0.07
2.1
76.64
40.8

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026868
16116606 - 16184479
67874
ENSAPLT00000046969
16116606 - 16127103
10498
ENSAPLT00000018458
16116606 - 16136305
19700
ENSAPLT00000042190
16116606 - 16129072
12467
ENSAPLT00000009047
16116606 - 16127103
10498
ENSAPLT00000035442
16116606 - 16127103
10498
ENSAPLT00000027499
16116606 - 16149602
32997